Gradle cleanup

Removed all outdated dependencies, repositories, etc.
This allows us to have a clean state to build upon without having to care
about obsolete things.

Removed the deobf jar since forge can handle normal ones just fine since 1.8.9.

Fixed build errors during javadoc creation due to missing symbols caused
by ForgeGradle breaking gradle conventions and not providing the
necessary dependencies.

gradle/scripts/dependencies.gradle

@@ -1,4 +1,3 @@
-
 /*
  * This file is part of Applied Energistics 2.
  * Copyright (c) 2013 - 2014, AlgorithmX2, All rights reserved.
@@ -17,80 +16,18 @@
  * along with Applied Energistics 2.  If not, see <http://www.gnu.org/licenses/lgpl>.
  */
 
-
-
 repositories {
     mavenLocal()
-    maven {
-        name "ChickenBones"
-        url "http://chickenbones.net/maven/"
-    }
 
     maven {
         name "Mobius"
         url "http://mobiusstrip.eu/maven"
     }
 
-    maven {
-        name "FireBall API Depot"
-        url "http://dl.tsr.me/artifactory/libs-release-local"
-    }
-
-    maven {
-        name = "Player"
-        url = "http://maven.ic2.player.to/"
-    }
-
-    maven {
-        name = "Tterrag"
-        url = "http://maven.tterrag.com/"
-    }
-
-    maven  {
-        name = "RX14 Proxy"
-        url = "http://mvn.rx14.co.uk/repo/"
-    }
-
-    maven {
-        name "OpenComputers Repo"
-        url = "http://maven.cil.li/"
-    }
-
-    maven {
-        name = "MM repo"
-        url = "http://maven.k-4u.nl/"
-    }
-
     maven {
         name = "JEI repo"
         url "http://dvs1.progwml6.com/files/maven"
     }
-
-    ivy {
-        name "BuildCraft"
-        artifactPattern "http://www.mod-buildcraft.com/releases/BuildCraft/[revision]/[module]-[revision]-[classifier].[ext]"
-    }
-
-//  CurseForge DNS for TE is not available or I am just being unlucky, code part can stay since this is applicable to any other curseforge mod though
-//    ivy {
-//        name = "CoFHLib"
-//        artifactPattern "http://addons.cursecdn.com/files/2212/893/[module]-[revision].[ext]"
-//    }
-//
-//    ivy {
-//        name = "CoFHCore"
-//        artifactPattern "http://addons.cursecdn.com/files/2212/895/[module]-[revision].[ext]"
-//    }
-
-//    ivy {
-//        name = "ThermalExpansion"
-//        artifactPattern "http://addons.curse.cursecdn.com/files/2212/446/[module]-[revision].[ext]"
-//    }
-
-//    ivy {
-//        name = "ThermalFoundation"
-//        artifactPattern "http://addons.curse.cursecdn.com/files/2212/444/[module]-[revision].[ext]"
-//    }
 }
 
 configurations {
@@ -98,55 +35,16 @@ configurations {
 }
 
 dependencies {
-    // installable
-    mods "mcp.mobius.waila:Waila:${waila_version}_1.9.4:dev"
+    // installable runtime dependencies
+    mods "mcp.mobius.waila:Waila:${waila_version}"
 
-//    mods "mcp.mobius.jabba:Jabba:${jabba_version}_${minecraft_version}:dev"
-//    mods "codechicken:EnderStorage:${minecraft_version}-${enderstorage_version}:dev"
-//    mods "codechicken:Translocator:${minecraft_version}-${translocator_version}:dev"
-//    mods "net.industrial-craft:industrialcraft-2:${ic2_version}-experimental:dev"
-//    mods "com.enderio:EnderIO:${minecraft_version}-${enderio_version}:dev"
-//    mods "net.mcft.copy.betterstorage:BetterStorage:${minecraft_version}-${betterstorage_version}:deobf"
-//    mods "inventorytweaks:InventoryTweaks:${invtweaks_version}:deobf"
-//    mods "li.cil.oc:OpenComputers:MC${minecraft_version}-${opencomputers_version}:dev"
-
-//    mods name: 'CoFHLib', version: "[${minecraft_version}]${cofhlib_version}-dev", ext: 'jar'
-//    mods name: 'CoFHCore', version: "[${minecraft_version}]${cofhcore_version}-dev", ext: 'jar'
-//    mods name: 'ThermalExpansion', version: "[${minecraft_version}]${texpansion_version}-dev", ext: 'jar'
-//    mods name: 'ThermalFoundation', version: "[${minecraft_version}]${tfoundation_version}-dev", ext: 'jar'
-
-//    compile "codechicken:ForgeMultipart:${minecraft_version}-${fmp_version}:dev"
-//    compile "codechicken:CodeChickenLib:${minecraft_version}-${code_chicken_lib_version}:dev"
-//    compile "codechicken:CodeChickenCore:${minecraft_version}-${code_chicken_core_version}:dev"
-//    compile "codechicken:NotEnoughItems:${minecraft_version}-${nei_version}:dev"
-//    compile "com.mod-buildcraft:buildcraft:${bc_version}:dev"
-//    compile "pneumaticCraft:PneumaticCraft-${minecraft_version}:${pneumaticcraft_version}:api"
-
-    // provided APIs
-//    compile "li.cil.oc:OpenComputers:MC${minecraft_version}-${opencomputers_version}:api"
-//    compile "net.industrial-craft:industrialcraft-2:${ic2_version}-experimental:api"
-//    compile "net.mcft.copy.betterstorage:BetterStorage:${minecraft_version}-${betterstorage_version}:api"
-
-    // self compiled APIs
-//    compile "appeng:Waila:${waila_version}_${minecraft_version}:api"
-//    compile "appeng:RotaryCraft:${rotarycraft_version}:api"
-//    compile "appeng:mekanism:${minecraft_version}-${mekansim_version}:api"
-//    compile "appeng:InventoryTweaks:${invtweaks_version}:api"
-
-    // self compiled stubs
-//    compile(group: 'api', name: 'coloredlightscore', version: "${api_coloredlightscore_version}")
-//    compile(group: 'api', name: 'craftguide', version: "${api_craftguide_version}")
-//    compile(group: 'api', name: 'immibis', version: "${api_immibis_version}")
-//    compile(group: 'api', name: 'mfr', version: "${api_mfr_version}")
-//    compile(group: 'api', name: 'railcraft', version: "${api_railcraft_version}")
-//    compile(group: 'api', name: 'rf', version: "${api_rf_version}")
-
-    // compile against various APIs
-    compileOnly "mezz.jei:jei_1.10.2:${jei_version}:api"
-    compileOnly "mcp.mobius.waila:Waila:${waila_version}_1.9.4:dev"
+    // compile against provided APIs
+    compileOnly "mezz.jei:jei_${minecraft_version}:${jei_version}:api"
+    compileOnly "mcp.mobius.waila:Waila:${waila_version}"
 
     // at runtime, use the full JEI jar
-    runtime "mezz.jei:jei_1.10.2:${jei_version}"
+    runtime "mezz.jei:jei_${minecraft_version}:${jei_version}"
 
+    // unit test dependencies
     testCompile "junit:junit:4.12"
 }