Gradle cleanup

Removed all outdated dependencies, repositories, etc.
This allows us to have a clean state to build upon without having to care
about obsolete things.

Removed the deobf jar since forge can handle normal ones just fine since 1.8.9.

Fixed build errors during javadoc creation due to missing symbols caused
by ForgeGradle breaking gradle conventions and not providing the
necessary dependencies.

gradle/scripts/optional.gradle

@@ -1,116 +1,32 @@
+/*
+ * This file is part of Applied Energistics 2.
+ * Copyright (c) 2013 - 2014, AlgorithmX2, All rights reserved.
+ *
+ * Applied Energistics 2 is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * Applied Energistics 2 is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with Applied Energistics 2.  If not, see <http://www.gnu.org/licenses/lgpl>.
+ */
+ 
 task wrapper(type: Wrapper) {
-    gradleVersion = "2.7"
+    gradleVersion = "2.14"
 }
 
 // WAILA
 task installWaila(type: Copy, dependsOn: "deinstallWaila") {
     from { configurations.mods }
-    include "**/*Waila*dev.jar"
+    include "**/*Waila*.jar"
     into file(minecraft.runDir + "/mods")
 }
 
 task deinstallWaila(type: Delete) {
     delete fileTree(dir: minecraft.runDir + "/mods", include: "*Waila*.jar")
 }
-
-// JABBA
-task installJabba(type: Copy, dependsOn: "deinstallJabba") {
-    from { configurations.mods }
-    include "**/*Jabba*dev.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallJabba(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*Jabba*.jar")
-}
-
-// ENDER STORAGE
-task installEnderStorage(type: Copy, dependsOn: "deinstallEnderStorage") {
-    from { configurations.mods }
-    include "**/*EnderStorage*dev.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallEnderStorage(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*EnderStorage*.jar")
-}
-
-// TRANSLOCATOR
-task installTranslocator(type: Copy, dependsOn: "deinstallTranslocator") {
-    from { configurations.mods }
-    include "**/*Translocator*dev.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallTranslocator(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*Translocator*.jar")
-}
-
-// INDUSTRIALCRAFT
-task installIC2(type: Copy, dependsOn: "deinstallIC2") {
-    from { configurations.mods }
-    include "**/*industrialcraft*dev.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallIC2(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*industrialcraft*.jar")
-}
-
-// ENDER IO
-task installEnderIO(type: Copy, dependsOn: "deinstallEnderIO") {
-    from { configurations.mods }
-    include "**/*EnderIO*dev.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallEnderIO(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*EnderIO*.jar")
-}
-
-// TE
-//task installTE(type: Copy, dependsOn: "deinstallTE") {
-//    from { configurations.mods }
-//    include "**/*CoFHLib*.jar"
-//    include "**/*CoFHCore*.jar"
-//    include "**/*ThermalFoundation*.jar"
-//    include "**/*ThermalExpansion*.jar"
-//
-//    into file(minecraft.runDir + "/mods")
-//}
-//
-//task deinstallTE(type: Delete) {
-//    delete fileTree(dir: minecraft.runDir + "/mods", includes: ["*CoFHLib*.jar", "*CoFHCore*.jar", "*ThermalFoundation*.jar", "*ThermalExpansion*.jar"])
-//}
-
-// INV TWEAKS
-task installInvTweaks(type: Copy, dependsOn: "deinstallInvTweaks") {
-    from { configurations.mods }
-    include "**/*InventoryTweaks*dev*.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallInvTweaks(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*InventoryTweaks*.jar")
-}
-
-// BETTER STORAGE
-task installBetterStorage(type: Copy, dependsOn: "deinstallBetterStorage") {
-    from { configurations.mods }
-    include "**/*BetterStorage*deobf*.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallBetterStorage(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*BetterStorage*.jar")
-}
-
-task installOpenComputers(type: Copy, dependsOn: "deinstallOpenComputers") {
-    from { configurations.mods }
-    include "**/*OpenComputer*dev*.jar"
-    into file(minecraft.runDir + "/mods")
-}
-
-task deinstallOpenComputers(type: Delete) {
-    delete fileTree(dir: minecraft.runDir + "/mods", include: "*OpenComputers*.jar")
-}